The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
نویسندگان
چکیده
The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.
منابع مشابه
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata des...
متن کاملOrganism Sequencing , Annotation , and Comparative Genomics 1 U . S . DOE Joint Genome Institute Microbial Sequencing : Genomes to Life Projects
The US DOE Joint Genome Institute (JGI) sequences microbial and metagenomic projects through three main programs: DOE Microbial Genome Program (MGP), JGI Community Sequencing Program (CSP) and DOE Genomes to Life Program (GTL). The principle goal of the MGP is to fund sequencing projects related to DOE interests, the principle goal of the CSP is to fund sequencing projects from a broad range of...
متن کاملThe standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the ass...
متن کاملThe genome portal of the Department of Energy Joint Genome Institute: 2014 updates
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a national user facility, serves the diverse scientific community by providing integrated high-throughput sequencing and computational analysis to enable system-based scientific approaches in support of DOE missions related to clean energy generation and environmental characterization. The JGI Genome Portal (http://genome.jgi.doe...
متن کاملErratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
[This corrects the article DOI: 10.1186/s40793-015-0077-y.].
متن کامل